/***************************************************************************
**
**      454 Life Sciences Corporation
**         Newbler Metrics Results
**
**      Date of Assembly: 2009/08/17 15:55:15
**      Project Directory: /data/S903591ASU/P_2009_08_17_15_54_41_runAssembly
**      Software Release: 2.0.01.14
**
***************************************************************************/

/*
**  Input information.
*/

runData
{
	file
	{
		path = "/data/S903591ASU/F0S18N101.sff";

		numberOfReads = 589180, 589169;
		numberOfBases = 221050149, 220025597;
	}

	file
	{
		path = "/data/S903591ASU/F0S18N102.sff";

		numberOfReads = 561548, 561532;
		numberOfBases = 202886470, 201903660;
	}

}

/*
**  Operation metrics.
*/

runMetrics
{
	totalNumberOfReads = 1150701; 
	totalNumberOfBases = 421929257; 

	numberSearches   = 659880;
	seedHitsFound    = 308941093, 468.18;
	overlapsFound    = 22669449, 34.35, 7.34%;
	overlapsReported = 19107380, 28.96, 6.18%;
	overlapsUsed     = 1270699, 1.93, 6.65%;
}

readAlignmentResults
{
	file
	{
		path = "/data/S903591ASU/F0S18N101.sff";

		numAlignedReads     = 478366, 81.19%;
		numAlignedBases     = 167997203, 76.35%;
		inferredReadError  = 1.13%, 1901241;
	}

	file
	{
		path = "/data/S903591ASU/F0S18N102.sff";

		numAlignedReads     = 453944, 80.84%;
		numAlignedBases     = 154030437, 76.29%;
		inferredReadError  = 1.16%, 1794104;
	}

}

/*
** Consensus distribution information.
*/
consensusDistribution
{
	fullDistribution
	{
		signalBin =  0.0, 283582;
		signalBin =  0.2, 1;
		signalBin =  0.3, 3;
		signalBin =  0.4, 5;
		signalBin =  0.5, 736;
		signalBin =  0.6, 4312;
		signalBin =  0.7, 63287;
		signalBin =  0.8, 1263453;
		signalBin =  0.9, 8636145;
		signalBin =  1.0, 5326926;
		signalBin =  1.1, 355278;
		signalBin =  1.2, 22760;
		signalBin =  1.3, 3985;
		signalBin =  1.4, 1603;
		signalBin =  1.5, 1870;
		signalBin =  1.6, 7741;
		signalBin =  1.7, 72184;
		signalBin =  1.8, 629056;
		signalBin =  1.9, 1847804;
		signalBin =  2.0, 1056216;
		signalBin =  2.1, 148369;
		signalBin =  2.2, 14124;
		signalBin =  2.3, 2865;
		signalBin =  2.4, 1804;
		signalBin =  2.5, 2804;
		signalBin =  2.6, 9585;
		signalBin =  2.7, 46552;
		signalBin =  2.8, 230343;
		signalBin =  2.9, 512409;
		signalBin =  3.0, 306341;
		signalBin =  3.1, 59627;
		signalBin =  3.2, 9696;
		signalBin =  3.3, 2886;
		signalBin =  3.4, 2123;
		signalBin =  3.5, 3749;
		signalBin =  3.6, 9361;
		signalBin =  3.7, 27816;
		signalBin =  3.8, 76037;
		signalBin =  3.9, 125396;
		signalBin =  4.0, 98494;
		signalBin =  4.1, 48436;
		signalBin =  4.2, 20209;
		signalBin =  4.3, 7531;
		signalBin =  4.4, 3272;
		signalBin =  4.5, 2767;
		signalBin =  4.6, 4323;
		signalBin =  4.7, 8836;
		signalBin =  4.8, 20856;
		signalBin =  4.9, 39889;
		signalBin =  5.0, 42287;
		signalBin =  5.1, 22854;
		signalBin =  5.2, 9104;
		signalBin =  5.3, 3797;
		signalBin =  5.4, 2285;
		signalBin =  5.5, 2116;
		signalBin =  5.6, 2876;
		signalBin =  5.7, 4261;
		signalBin =  5.8, 6249;
		signalBin =  5.9, 8511;
		signalBin =  6.0, 9084;
		signalBin =  6.1, 6932;
		signalBin =  6.2, 4117;
		signalBin =  6.3, 2476;
		signalBin =  6.4, 1786;
		signalBin =  6.5, 1688;
		signalBin =  6.6, 2003;
		signalBin =  6.7, 2514;
		signalBin =  6.8, 3183;
		signalBin =  6.9, 3719;
		signalBin =  7.0, 3402;
		signalBin =  7.1, 2662;
		signalBin =  7.2, 1833;
		signalBin =  7.3, 1295;
		signalBin =  7.4, 979;
		signalBin =  7.5, 918;
		signalBin =  7.6, 932;
		signalBin =  7.7, 957;
		signalBin =  7.8, 1073;
		signalBin =  7.9, 1125;
		signalBin =  8.0, 1045;
		signalBin =  8.1, 825;
		signalBin =  8.2, 651;
		signalBin =  8.3, 620;
		signalBin =  8.4, 567;
		signalBin =  8.5, 540;
		signalBin =  8.6, 547;
		signalBin =  8.7, 556;
		signalBin =  8.8, 483;
		signalBin =  8.9, 446;
		signalBin =  9.0, 441;
		signalBin =  9.1, 441;
		signalBin =  9.2, 334;
		signalBin =  9.3, 360;
		signalBin =  9.4, 330;
		signalBin =  9.5, 326;
		signalBin =  9.6, 289;
		signalBin =  9.7, 300;
		signalBin =  9.8, 260;
		signalBin =  9.9, 235;
		signalBin = 10.0, 193;
		signalBin = 10.1, 218;
		signalBin = 10.2, 175;
		signalBin = 10.3, 155;
		signalBin = 10.4, 196;
		signalBin = 10.5, 147;
		signalBin = 10.6, 158;
		signalBin = 10.7, 136;
		signalBin = 10.8, 126;
		signalBin = 10.9, 112;
		signalBin = 11.0, 113;
		signalBin = 11.1, 112;
		signalBin = 11.2, 101;
		signalBin = 11.3, 99;
		signalBin = 11.4, 91;
		signalBin = 11.5, 79;
		signalBin = 11.6, 86;
		signalBin = 11.7, 94;
		signalBin = 11.8, 84;
		signalBin = 11.9, 83;
		signalBin = 12.0, 77;
		signalBin = 12.1, 74;
		signalBin = 12.2, 64;
		signalBin = 12.3, 77;
		signalBin = 12.4, 55;
		signalBin = 12.5, 54;
		signalBin = 12.6, 50;
		signalBin = 12.7, 44;
		signalBin = 12.8, 49;
		signalBin = 12.9, 50;
		signalBin = 13.0, 45;
		signalBin = 13.1, 43;
		signalBin = 13.2, 26;
		signalBin = 13.3, 30;
		signalBin = 13.4, 41;
		signalBin = 13.5, 32;
		signalBin = 13.6, 27;
		signalBin = 13.7, 38;
		signalBin = 13.8, 23;
		signalBin = 13.9, 31;
		signalBin = 14.0, 15;
		signalBin = 14.1, 24;
		signalBin = 14.2, 21;
		signalBin = 14.3, 22;
		signalBin = 14.4, 22;
		signalBin = 14.5, 18;
		signalBin = 14.6, 13;
		signalBin = 14.7, 12;
		signalBin = 14.8, 13;
		signalBin = 14.9, 16;
		signalBin = 15.0, 19;
		signalBin = 15.1, 24;
		signalBin = 15.2, 20;
		signalBin = 15.3, 16;
		signalBin = 15.4, 8;
		signalBin = 15.5, 11;
		signalBin = 15.6, 10;
		signalBin = 15.7, 4;
		signalBin = 15.8, 5;
		signalBin = 15.9, 8;
		signalBin = 16.0, 11;
		signalBin = 16.1, 6;
		signalBin = 16.2, 4;
		signalBin = 16.3, 10;
		signalBin = 16.4, 6;
		signalBin = 16.5, 15;
		signalBin = 16.6, 6;
		signalBin = 16.7, 12;
		signalBin = 16.8, 5;
		signalBin = 16.9, 10;
		signalBin = 17.0, 5;
		signalBin = 17.1, 8;
		signalBin = 17.2, 4;
		signalBin = 17.3, 6;
		signalBin = 17.4, 7;
		signalBin = 17.5, 7;
		signalBin = 17.6, 4;
		signalBin = 17.7, 11;
		signalBin = 17.8, 8;
		signalBin = 17.9, 3;
		signalBin = 18.0, 9;
		signalBin = 18.1, 5;
		signalBin = 18.2, 4;
		signalBin = 18.3, 3;
		signalBin = 18.4, 1;
		signalBin = 18.5, 8;
		signalBin = 18.6, 4;
		signalBin = 18.7, 4;
		signalBin = 18.8, 5;
		signalBin = 18.9, 1;
		signalBin = 19.0, 2;
		signalBin = 19.1, 2;
		signalBin = 19.2, 3;
		signalBin = 19.3, 2;
		signalBin = 19.4, 5;
		signalBin = 19.5, 3;
		signalBin = 19.6, 5;
		signalBin = 19.7, 3;
		signalBin = 19.9, 4;
		signalBin = 20.0, 1;
		signalBin = 20.1, 1;
		signalBin = 20.2, 2;
		signalBin = 20.3, 1;
		signalBin = 20.4, 4;
		signalBin = 20.5, 1;
		signalBin = 20.6, 1;
		signalBin = 20.7, 2;
		signalBin = 20.8, 1;
		signalBin = 20.9, 2;
		signalBin = 21.1, 2;
		signalBin = 21.2, 2;
		signalBin = 21.3, 1;
		signalBin = 21.5, 3;
		signalBin = 21.6, 2;
		signalBin = 21.7, 2;
		signalBin = 21.8, 1;
		signalBin = 22.2, 2;
		signalBin = 22.3, 2;
		signalBin = 22.4, 2;
		signalBin = 22.9, 1;
		signalBin = 23.1, 2;
		signalBin = 23.3, 2;
		signalBin = 24.7, 1;
		signalBin = 25.2, 2;
		signalBin = 26.0, 1;
		signalBin = 28.7, 1;
	}

	distributionPeaks
	{
		signalPeak = 1, 0.96;
		signalPeak = 2, 1.96;
		signalPeak = 3, 2.94;
		signalPeak = 4, 3.96;
		signalPeak = 5, 5.00;
		signalPeak = 6, 6.00;
		signalPeak = 7, 6.96;
		signalPeak = 8, 7.90;
		signalPeak = 9, 8.80;
		signalPeak = 10, 9.70;
		signalPeak = 11, 10.62;
		signalPeak = 12, 11.58;
		signalPeak = 13, 12.48;
	}

	thresholdsUsed
	{
		threshold = 0, 1, 0.48;
		threshold = 1, 2, 1.48;
		threshold = 2, 3, 2.44;
		threshold = 3, 4, 3.40;
		threshold = 4, 5, 4.52;
		threshold = 5, 6, 5.50;
		threshold = 6, 7, 6.52;
		threshold = 7, 8, 7.58;
		threshold = 8, 9, 8.28;
		threshold = 9, 10, 9.24;
		threshold = 10, 11, 10.16;
		threshold = 11, 12, 11.10;
		threshold = 12, 13, 11.90;

		interpolationAmount = 0.95;
	}
}


/*
**  Consensus results.
*/
consensusResults
{
	readStatus
	{
		numAlignedReads    = 932310, 81.02%;
		numAlignedBases    = 322027640, 76.32%;
		inferredReadError = 1.15%, 3695345;

		numberAssembled = 643026;
		numberPartial   = 289250;
		numberSingleton = 157093;
		numberRepeat    = 34048;
		numberOutlier   = 23703;
		numberTooShort  = 3581;
	}

	largeContigMetrics
	{
		numberOfContigs   = 81137;
		numberOfBases     = 77889183;

		avgContigSize     = 959;
		N50ContigSize     = 1019;
		largestContigSize = 6361;

		Q40PlusBases      = 68551017, 88.01%;
		Q39MinusBases     = 9338166, 11.99%;
	}

	allContigMetrics
	{
		numberOfContigs = 158591;
		numberOfBases   = 104658546;
	}
}